How should I indicate in the Physical Therapist Report that modifications to the treatment protocol were made?

Even if you made some modifications to the treatment protocol, you should still answer YES on the PT Report form that the prescribed PT Protocol was followed. Further on in the report you should indicate which sets of exercises, if any, weren’t performed and why. However, if you did not follow the treatment protocol at all, for example because you did not receive it prior to treatment, then you should answer NO accordingly.